PubMed

PLoS One. 2025 Jan 6;20(1):e0313337. doi: 10.1371/journal.pone.0313337. eCollection 2025.ABSTRACTAdonis amurensis Regel et Radde is a remarkable and important spring ephemeral plant and gained considerable attention because of its remarkable medicinal properties. Extensive research has been conducted on its therapeutic applications, physical characteristics, flowering patterns, reproductive, cultural and molecular biology. However, there is a lack of comprehensive understanding regarding the metabolic changes associated with flower developmental stages. This study was designed to investigate the changes in metabolites and their interrelationships at five distinct developmental stages of A. amurensis flower: Flower Primordium (FP), Sepal Stage (SE), Perianth Primordium (PE), Stamens Stage (SE), and Pistil Stage (PI). High-performance liquid chromatography coupled with mass spectrometry (HPLC-MS) was utilized to investigate and characterize the metabolites associated with specific flower developmental stages. The various stages of flower development exerted a substantial influence on both the quantity and composition of metabolites present, signifying significant changes in the types and quantities of metabolites throughout the developmental progression of the flower. Metabolite Set Enrichment Analysis (MSEA) and annotation via the KEGG database highlighted enriched pathways such as flavonoid biosynthesis and plant hormone signal transduction, which are crucial for flower maturation. The highest number of differentially expressed metabolites was identified between the SE and PI stages, emphasizing a marked appreciation in metabolite expression linked to the development of reproductive organs. Key pathways such as flavonoid biosynthesis and plant hormone signal transduction were markedly enriched, underscoring their roles in flower maturation and potential pharmacological applications. Our research not only helps us in understanding the metabolomic dynamics during the flower development of A. amurensis but also emphasizes the potential pharmacological implication of stage-specific metabolites. Identifying these metabolites can help targeted bioprospecting and optimization of extraction methods to tackle the plant's full therapeutic potential, particularly in the development of treatments for cardiac insufficiency, edema, and possibly cancer.PMID:39761237 | DOI:10.1371/journal.pone.0313337

Chronobiol Int. 2025 Jan 6:1-14. doi: 10.1080/07420528.2024.2449015. Online ahead of print.ABSTRACTSeven-day actigraphy was performed within 1 month in 122 community-dwelling adults (mean age 24.40 y, 31 (25.4%) men) in the same city of Tyumen, Russia. Groups with different COVID-19 status (present, COVID-19(+), n = 79 vs absent, COVID-19(-), n = 43) did not differ in mean age, gender distribution, or body mass index. Vaccination status was equally represented in the COVID groups. We found that COVID-19 status, a history of SARS-CoV-2 infection, was differentially associated with daylight susceptibility. Daylight exposure was estimated using parametric and non-parametric indices: 24-h Amplitude, MESOR or M10 of white and blue light exposure (BLE) and compared between the groups. Distinctively in COVID-19(+) individuals, a smaller normalized 24-h amplitude of BLE (NAbl) was associated with lower circadian robustness, assessed by a smaller relative non-parametric amplitude (RA), a lower circadian function index (CFI), later bedtime, later onset of least active 5 h (L5), shorter total sleep duration, later phase and smaller circadian amplitude of physical motor activity. Such associations were absent in the overall COVID-19(-) population or in the vaccinated COVID(-) group. Considering COVID-status and light hygiene, defined as NAbl ≥ 1 versus NAbl < 1, only those with COVID(+) and NAbl < 1 (poorer light hygiene) had a statistically significantly delayed phase of activity and sleep, reduced circadian amplitude of physical activity, and lower circadian robustness. Accounting for gender and BMI, participants diagnosed with COVID-19 at an earlier date were older and had poorer circadian light hygiene. Altogether, our data suggest that those with COVID-19 were more vulnerable to circadian disruption due to poor circadian light hygiene, manifested as phase delay, small amplitude, a less robust circadian pattern of activity, and as delayed sleep. Our data suggest that the need for optimal circadian light hygiene is greater in individuals with a history of SARS-CoV-2 infection.PMID:39761104 | DOI:10.1080/07420528.2024.2449015

Biol Trace Elem Res. 2025 Jan 6. doi: 10.1007/s12011-024-04505-w. Online ahead of print.ABSTRACTCadmium is a heavy metal contaminant known to cause various health issues. However, limited research exists on the serum metabolomic effects of cadmium exposure in children. In this study, we recruited 42 children to analyze their serum metabolomic profiles, along with measuring urinary cadmium and creatinine concentrations, to evaluate the impact of environmental cadmium exposure on serum metabolism. We also screened for potential biomarkers. The findings revealed that environmental cadmium exposure led to disruptions in amino acid metabolism, biosynthesis of secondary metabolites, endocrine function, lipid metabolism, nervous system function, sensory processes, and the metabolism of cofactors and vitamins in children. Lansioside C, Hydroxytanshinone, and 1-Methylinosine were identified as potential biomarkers. In conclusion, environmental cadmium exposure negatively impacts children's neurological development by inducing metabolic disturbances and increasing the risk of oxidative stress-related disorders. This study provides a valuable theoretical foundation for future efforts to prevent the harmful effects of cadmium exposure in children and mitigate associated health risks.PMID:39760993 | DOI:10.1007/s12011-024-04505-w

Metab Brain Dis. 2025 Jan 6;40(1):89. doi: 10.1007/s11011-024-01513-6.ABSTRACTSerious neurological disorders were associated with cadmium toxicity. Hence, this research aimed to investigate the potential neuroprotective impacts of the ethanolic extracts of Citrus aurantium unripe fruits and leaves (CAF and CAL, respectively) at doses 100 and 200 mg/kg against cadmium chloride-provoked brain dysfunction in rats for 30 consecutive days. HPLC for natural pigment content revealed that CAF implied higher contents of Chlorophyll B, while the CAL has a high yield of chlorophyll A and total carotenoid. Fifty-seven chromatographic peaks were identified by UPLC/MS/MS; 49 and 29 were recognized from CAF or CAL, respectively. Four compounds were isolated from CAF: 3',4',7 -trihydroxyflavone, isorhainetin, vitexin, and apigenin. In vitro studies outlined the antioxidant capacity of studied extracts where CAF showed better scavenging radical DPPH activity. Results clarified that both extracts with a superior function of CAF at the high adopted dose significantly ameliorated CdCl2-induced neuro-oxidative stress and neuro-inflammatory response via restoring antioxidant status and hindering nuclear factor kappa B (NF-κB) stimulation. Moreover, it up-regulated the levels of phospho-protein kinase B (p-Akt), phospho- cAMP-response element binding protein (p-CREB), and brain-derived neurotropic factor (BDNF) levels, and elicited a marked decrease in the content of glycogen synthase kinase 3 beta (GSK3β), besides amending Caspase-3 and hyperphosphorylation of tau protein in brain tissues. Moreover, a significant improvement in the rats' behavioral tasks of the CAL and CAF-treated groups has been recorded, as indicated by marked preservation in locomotion, exploratory, and memory functions of the experimental rats. In conclusion, the reported neuroprotective impacts of C. aurantium extracts may be through modulating p-AKT/p-CREB/BDNF and / or p-Akt/ GSK3β/NF-κB signaling pathways.PMID:39760898 | DOI:10.1007/s11011-024-01513-6

Arch Toxicol. 2025 Jan 6. doi: 10.1007/s00204-024-03947-4. Online ahead of print.ABSTRACTSnake envenomation presents a significant global health challenge, especially in rural areas of tropical and subtropical regions. Traditional antivenom therapies face limitations related to efficacy, availability, and specificity, prompting a need for novel approaches. Recent advancements in omics technologies, particularly metabolomics and proteomics, have enhanced our understanding of snake venom composition, toxicity, and potential therapeutic strategies. Metabolomics allows for the study of metabolic changes induced by venom, providing insights into disrupted pathways and possible inhibitors. Proteomics facilitates the identification and characterization of venom proteins, unveiling their interactions with therapeutic agents. Integrative databases such as the Snake Venom Database (SVDB) and STAB Profiles enhance this research by cataloging venom components and aiding in the analysis of venom-antivenom interactions. The combined application of metabolomics and proteomics has led to the identification of crucial metabolic pathways and protein targets essential for effective venom inhibition. This review explores current advances in these fields, emphasizing the role of omics in identifying novel inhibitors and developing next-generation antivenoms. The integrated approach of metabolomics and proteomics offers a comprehensive understanding of snake venom biology, paving the way for more effective and tailored therapeutic solutions for envenomation.PMID:39760869 | DOI:10.1007/s00204-024-03947-4

AIDS. 2025 Jan 3. doi: 10.1097/QAD.0000000000004103. Online ahead of print.ABSTRACTHIV-1 remains a global challenge, especially in high-prevalence areas like South Africa. This study explores the relationship between inflammation and metabolism in people with HIV, focusing on immune markers and the tryptophan-kynurenine (Trp-Kyn) pathway. We examined immune markers (hsCRP, suPAR, IL-6, NGAL, and sCD163) and Trp-Kyn metabolites (QUIN, Trp, Kyn, Trp/Kyn ratio, and kynurenic acid) in n = 69 treatment-naive South African people with HIV. Using targeted liquid chromatography-tandem mass spectrometry (LC-MS/MS) metabolomics and various assays, we observed significant associations between immune markers and Trp-Kyn metabolites. IL-6 was negatively associated with Trp (P < 0.001) and positively with the Kyn/Trp ratio (P = 0.005). hsCRP was positively associated with QUIN (P = 0.036). suPAR showed significant negative associations with Trp (P = 0.036), positive associations with the Kyn/Trp ratio (P < 0.001), and QUIN (P = 0.007). sCD163 negatively associated with Trp (P < 0.001) and positively with the Kyn/Trp ratio (P < 0.001). When participants were stratified by inflammation levels (based on CRP), IL-6 (P = 0.002), QUIN (P = 0.009), and Kyn (P = 0.032) were significantly higher in the high inflammation group. Specific associations were observed only in certain groups, such as IL-6 negatively associating with Trp and kynurenic acid in the high inflammation group, and suPAR associating negatively with Trp in the low inflammation group. These exploratory findings provide further insight into how peripheral inflammation and metabolism are interrelated in South African people with HIV, potentially guiding future therapeutic strategies.PMID:39760690 | DOI:10.1097/QAD.0000000000004103

J Sep Sci. 2025 Jan;48(1):e70072. doi: 10.1002/jssc.70072.ABSTRACTEvaluating the practical utility of endangered plant species is crucial for their conservation. Nevertheless, numerous endangered plants, including Sinocalycanthus chinensis, lack historical usage data, leading to a paucity of guidance in traditional pharmacological research. This gap impedes their development and potential utilization. Ultra-high-performance liquid chromatography and Orbitrap high-resolution mass spectrometry were employed to analyze the S. chinensis leaves collected at different harvesting times. Then, the metabolites were automatically annotated by a self-built R script in conjunction with characteristic fragment ions, neutral loss filtering, and feature-based molecular networking. By integrating metabolomics with network medicine analysis, the potential usage and optimal harvest times for S. chinensis were unlocked. A total of 305 metabolites were identified, with 66.8% annotated by self-built R script. A progressive increase in metabolite disparities was observed from May to August, followed by a relatively minor distinction from August to October. Notably diverse metabolites were detected in S. chinensis harvested during different periods, implying potential variations in efficacy. Network medicine analysis indicated possible therapeutic implications of S. chinensis for lung cancer, diabetes, bladder cancer, and Alzheimer's disease. Samples collected in May and September demonstrated exceptional efficacy. Harvesting was strategically conducted during these months based on variations in sample characteristics and metabolite content, tailored to their intended applications for dietary or medicinal purposes. This study developed an efficient methodology for investigating metabolites and exploring the potential applications of S. chinensis in food and herbal medicine. Consequently, it provides technical support for the sustainable conservation of endangered plants with limited clinical application experience.PMID:39760617 | DOI:10.1002/jssc.70072

Clin Chem Lab Med. 2025 Jan 7. doi: 10.1515/cclm-2024-1337. Online ahead of print.ABSTRACTOBJECTIVES: Urinary steroid profiling after hydrolysis of conjugates is an emerging tool to differentiate aggressive adrenocortical carcinomas (ACC) from benign adrenocortical adenomas (ACA). However, the shortcomings of deconjugation are the lack of standardized and fully validated hydrolysis protocols and the loss of information about the originally conjugated form of the steroids. This study aimed to evaluate the quality of the deconjugation process and investigate novel diagnostic biomarkers in urine without enzymatic hydrolysis.METHODS: 24 h urine samples from 40 patients with ACC and 40 patients with ACA were analyzed by untargeted metabolomics using liquid chromatography-high-resolution mass spectrometry both unmodified and after hydrolysis with arylsulfatase/glucuronidase from Helix pomatia. Both approaches were compared regarding the differentiation of ACC vs. ACA via ROC analyses and to evaluate the hydrolyzation efficiency of steroid conjugates.RESULTS: Steroid glucuronides were fully deconjugated, while some disulfates and all monosulfates were still largely detectable after enzymatic hydrolysis, suggesting incomplete and variable deconjugation. In unhydrolyzed urine, steroid monosulfates showed the best differentiation between ACC and ACA (highest AUC=0.983 for C21H32O6S, followed by its isomer and two isomers with the molecular formula C21H32O7S). Moreover, several disulfates were highly abundant and increased in ACC compared to ACA.CONCLUSIONS: This work highlights the limitations of hydrolyzing steroid conjugates before analysis and shows a possible superiority of a direct analysis approach compared to a hydrolysis approach from a methodological point of view and regarding diagnostic accuracy. Several steroid conjugates were found as promising diagnostic biomarkers for differentiation between ACC and ACA.PMID:39760337 | DOI:10.1515/cclm-2024-1337

Glia. 2025 Jan 6. doi: 10.1002/glia.24666. Online ahead of print.ABSTRACTHuman genetics studies lent firm evidence that microglia are key to Alzheimer's disease (AD) pathogenesis over a decade ago following the identification of AD-associated genes that are expressed in a microglia-specific manner. However, while alterations in microglial morphology and gene expression are observed in human postmortem brain tissue, the mechanisms by which microglia drive and contribute to AD pathology remain ill-defined. Numerous mouse models have been developed to facilitate the disambiguation of the biological mechanisms underlying AD, incorporating amyloidosis, phosphorylated tau, or both. Over time, the use of multiple technologies including bulk tissue and single cell transcriptomics, epigenomics, spatial transcriptomics, proteomics, lipidomics, and metabolomics have shed light on the heterogeneity of microglial phenotypes and molecular patterns altered in AD mouse models. Each of these 'omics technologies provide unique information and biological insight. Here, we review the literature on the approaches and findings of these methods and provide a synthesis of the knowledge generated by applying these technologies to mouse models of AD.PMID:39760224 | DOI:10.1002/glia.24666

Front Microbiol. 2024 Dec 20;15:1528258. doi: 10.3389/fmicb.2024.1528258. eCollection 2024.ABSTRACTBACKGROUND/AIM: The purpose of this study was to examine the hepatic bacterial composition and metabolome characteristics of patients with NAFLD using 16S rDNA sequencing and metabolomics. The results of the study revealed substantial differences in hepatic bacterial composition and metabolites between the NAFLD group and the control group. These differences were used to identify potential biomarkers that could be employed to diagnose NAFLD.SUBJECTS/METHODS: Liver tissues from 13 patients in the NAFLD group and 12 patients in the control group were collected for microbiota examination.RESULTS: The bacterial DNA profiles of the liver were significantly different between NAFLD patients and controls. NAFLD patients exhibited an enrichment of Enterobacterales, Mycobacteriales, Pseudomonadales, Flavobacteriales and Xanthomonadales, Sphingomonadales, Lysobact, which was characterised by a lack of erales. At the genus level, the abundance values of Escherichia-Shigella, Rhodococcus, and Chryseobacterium in the NAFLD group were significantly elevated, while the abundance values of Stenotrophomonas, Lawsonella and Sphingobium were significantly reduced. A total of 402 distinct metabolites were identified between the two groups, with 78 metabolites that were up-regulated and 14 metabolites that were down-regulated. The enrichment of metabolic pathways indicated that linoleic acid metabolism was the most significant contributor to the metabolic differences, and lipid metabolism was substantially differentiated. The hepatic metabolite levels were substantially correlated with the changes in hepatic microflora, as demonstrated by the correlation analysis.CONCLUSION: Differences in pathogenesis and host physiological function of NAFLD may be attributed to the hepatic flora and metabolomic characteristics. In the future, this presents new opportunities for the investigation of prospective diagnostic and therapeutic targets for NAFLD.PMID:39760085 | PMC:PMC11697427 | DOI:10.3389/fmicb.2024.1528258

Front Microbiol. 2024 Dec 20;15:1493272. doi: 10.3389/fmicb.2024.1493272. eCollection 2024.ABSTRACTThe Western Ghats of India is recognized as one of the world's eight "hottest hotspots" of biological diversity. Trichoderma-a well-known biocontrol agent, was explored from this hotspot. A total of 260 Trichoderma spp. isolates were studied, with 9% exhibiting strong biocontrol potential and crop growth-promoting activity. Furthermore, this study identified three novel isolates-Trichoderma caribbaeum var. caribbaeum, Trichoderma lixii, and Trichoderma brevicompactum-which are reported for the first time from the Western Ghats making a significant contribution to the field. Based on internal transcribed spacer ribosomal RNA (ITS-rRNA) and translation elongation factor 1-α (tef-1α) gene sequence analysis, molecular characterization, identified major isolates as Trichoderma koningiopsis, Trichoderma asperellum, T. caribbaeum var. caribbaeum, T. lixii, T. brevicompactum, Trichoderma atroviride, and Trichoderma erinaceum. Seed biopriming with the effective Trichoderma strain TR11 reduced the maydis leaf blight (MLB) disease index to 32.92% and improved plant growth-promoting attributes in maize. Defensive enzyme activities were increased 2.5-4.2-fold in various treatments with the TR11 isolate, along with enhanced lignification postpathogen inoculation, indicating strengthened plant defense mechanisms. The promising strain T. brevicompactum-TR11 produces secondary metabolites; among them, 5% were found to have a role in biocontrol activity such as octadecanoic acid, palmitic acid-TMS, 5-(4-nitrophenoxymethyl), furane-2-carboxaldehyde, and stearic acid-TMS, phosphoric acid-3TMS, galactopyranose, 5TMS. This study explored Trichoderma diversity in the Western Ghats of India with phylogenetic relationship, metabolomics insights, and biocontrol efficacy against MLB disease.PMID:39760082 | PMC:PMC11695376 | DOI:10.3389/fmicb.2024.1493272

Rep Pract Oncol Radiother. 2024 Dec 4;29(5):649-650. doi: 10.5603/rpor.102823. eCollection 2024.ABSTRACTMulti-omics approaches are revolutionizing cancer research and treatment by integrating single-modality omics methods, such as the transcriptome, genome, epigenome, epi-transcriptome, proteome, metabolome, and developing omics (single-cell omics). These technologies enable a deeper understanding of cancer and provide personalized treatment strategies. However, challenges such as standardization and appropriate methods for funneling complex information into clinical consequences remain. The tumor microenvironment (TME) is a complex system containing cancer cells, immune cells, stromal cells, and secreted molecules. To overcome these challenges, researchers can establish standardized protocols for data collection, analysis, and interpretation. Collaborations and data sharing among research groups and institutions can create a comprehensive and standardized multi-omics database, facilitating cross-validation and comparison of results. Multi-omics profiling enables in-depth characterization of diversified tumor types and better reveal their function in cancer immune escape. Datasets play a fundamental role in multi-omics approaches, with artificial intelligence and machine learning (AI) rapidly advancing in multi-omics for cancer.PMID:39759552 | PMC:PMC11698559 | DOI:10.5603/rpor.102823

Front Immunol. 2024 Dec 11;15:1473895. doi: 10.3389/fimmu.2024.1473895. eCollection 2024.ABSTRACTINTRODUCTION: The emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants, notably delta and omicron, has significantly accelerated the global pandemic, worsening conditions worldwide. However, there is a lack of research concerning the molecular mechanisms related to immune responses and metabolism induced by these variants.METHODS: Here, metabolomics combined with transcriptomics was performed to elucidate the immunometabolic changes in the lung of hamsters infected with delta and omicron variants.RESULTS: Both variants caused acute inflammation and lung pathology in intranasally infected hamsters. Principal component analysis uncovered the delta variant significantly altered lung metabolite levels between the pre- and post-infection states. Additionally, metabolic pathways determined by assessment of metabolites and genes in lung revealed significant alterations in arginine biosynthesis, glutathione metabolism, and tryptophan metabolism upon infection with both variants and closely linked to inflammatory cytokines, indicating immune activation and oxidative stress in response to both variants. These metabolic changes were also evident in the serum, validating the presence of systemic alterations corresponding to those identified in lung. Notably, the delta variant induced a more robust metabolic regulation than the omicron variant.DISCUSSION: The study suggests that multi-omics is a valuable approach for understanding immunometabolic responses to infectious diseases, and providing insights for effective treatment strategies.PMID:39759510 | PMC:PMC11697598 | DOI:10.3389/fimmu.2024.1473895

Heliyon. 2024 Dec 6;10(24):e41010. doi: 10.1016/j.heliyon.2024.e41010. eCollection 2024 Dec 30.ABSTRACTCoconut water is a popular drink in tropical countries and worldwide due to its delicious taste, easy consumption and nutritionally rich properties. Our study aimed to identify bioactive compounds of coconut varieties and their antioxidant as well as longevity effects in 2 different groups of coconuts. These include the bleeding coconut varieties, which are currently most available in the market, namely the Ban Phaeo and Ratchaburi coconut varieties, and the traditional coconut varieties, including Kon-jib and Sampran coconut varieties. Proton nuclear magnetic resonance (1H NMR) was used to profile the metabolites in coconut water which revealed 27 metabolites including sugar, organic acids, fatty acids, flavonoids and phenolic compounds. A multivariate data analysis demonstrated an organic acid and phenolic metabolites as the antioxidant bioactive metabolites in coconut water. In addition, the coconut varieties had higher antioxidant bioactive metabolites compared to traditional coconut varieties, while traditional coconut varieties had higher sugar levels. Furthermore, the varieties containing higher antioxidants bioactive metabolites were chosen to examine the longevity effect on human dermal fibroblasts (HDFs). The results revealed that coconut water can significantly decrease cytosolic oxidation in hydrogen peroxide treated HDFs cell line and mediated longevity of fibroblast cells by modulating the expression of proteins in longevity pathway. Data from our study indicate that coconut water serves as source of antioxidants which can be mediated longevity of dermal cell. Moreover, this study provides the useful information for the coconut water production and distribution business.PMID:39759299 | PMC:PMC11696670 | DOI:10.1016/j.heliyon.2024.e41010

Heliyon. 2024 Nov 19;10(24):e40515. doi: 10.1016/j.heliyon.2024.e40515. eCollection 2024 Dec 30.ABSTRACTBACKGROUND: Recurrent spontaneous abortion (RSA) is intricately linked to metabolic dysregulation at the maternal-fetal interface during early gestation. Abnormal levels of essential fatty acids and downstream oxylipins in decidua and chorionic villi have been identified as potential risk factors for RSA. Oxylipins have been linked to excessive inflammation, which might disrupt maternal-fetal immune tolerance, potentially contributing to RSA. Nonetheless, the exact fatty acid-oxylipin metabolic pathway at the matrernal-fetal interface in RSA occurrence remains unknown. Therefore, this research aimed to explore the effect of essential fatty acids, their transport, and downstream oxylipins at the maternal-fetal interface on RSA pathogenesis.METHODS: Plasma, chorionic villus, and decidual tissue samples from the first trimester were collected from healthy pregnant women undergoing elective pregnancy terminations, as well as from patients experiencing spontaneous abortion. The concentrations of essential fatty acids and their downstream oxylipins in the villi and decidua were quantified using gas chromatography-mass spectrometry (GC-MS) and liquid chromatography-tandem mass spectrometry (LC-MS). The expression of enzymes related to metabolic pathways was investigated by q-PCR. The ratios of M1/M2 macrophages were assessed by flow cytometry (FCM).RESULTS: This study found elevated concentrations of omega-6 fatty acids, encompassing arachidonic acid (AA), linoleic acid (LA), and dihomo-gamma-linolenic acid (DGLA) in maternal plasma and chorionic villi, whereas lower concentrations were observed in the decidua, than in samples from normal pregnancies. Further analysis revealed that the transport of these fatty acids was dysregulated at the maternal-fetal interface in RSA women, possibly due to the aberrant expression of the fatty acid translocase (FAT/CD36). In addition, this study revealed that RSA patients displayed higher levels of downstream oxylipins, such as prostaglandin F2a (PGF2a), prostaglandin E2 (PGE2), and leukotriene B4 (LTB4) in chorionic villi and decidua. These compounds may contribute to M1 inflammatory macrophage polarization in RSA, thereby forming a highly inflammatory environment and influencing immunomodulation at the maternal-fetal interface.CONCLUSION: The study revealed alterations in omega-6 fatty acids, CD36 transport, and AA downstream oxylipins in RSA, which in turn promote M1 macrophage polarization. Thus, this research has established a foundation for identifying potential biomarkers for, and providing novel insights into, the diagnosis and pathophysiology of RSA.PMID:39759287 | PMC:PMC11700280 | DOI:10.1016/j.heliyon.2024.e40515

Front Plant Sci. 2024 Dec 20;15:1498577. doi: 10.3389/fpls.2024.1498577. eCollection 2024.ABSTRACTChrysanthemum morifolium (CM), renowned for its diverse and vibrant varieties, holds significant ornamental and medicinal value. Despite this, the core regulatory mechanisms underlying its coloration, especially in non-petal tissues (i.e., the parts of CM that do not include petals, such as the reproductive tissues, receptacle and calyx), have been insufficiently studied. In this study, we performed transcriptomic and metabolomic analyses on yellow, gold, and white CM petals, as well as non-petal tissues, to investigate the molecular processes driving color variation. A total of 90 differential metabolites were identified, with flavonoids, their derivatives, and lipids emerging as the predominant components of the metabolic profile. At the transcriptional level, 38 pathways were significantly enriched based on the expression of differential genes. The combined metabolomic and transcriptomic analyses revealed that glycerophospholipid metabolism, primarily involving lipids, served as a key regulatory pathway for both petal and non-petal parts across different tissue colors. Notably, white CM exhibited marked differences from their gold and yellow counterparts at both the metabolic and transcriptional levels. These findings offer critical insights into the molecular mechanisms governing CM coloration and provide a foundation for optimizing future breeding efforts.PMID:39759235 | PMC:PMC11695349 | DOI:10.3389/fpls.2024.1498577

Front Plant Sci. 2024 Dec 20;15:1487613. doi: 10.3389/fpls.2024.1487613. eCollection 2024.ABSTRACTPolygonatum odoratum (Mill.) Druce is rich in bioactive components with high medicinal value. To maximize the clinical benefits, it is of great significance to efficiently extract key bioactive components from appropriate growth stages in which they are most abundant. In this study, we analyzed the changes of metabolite accumulation and protein expression in P. odoratum rhizomes at different growth stages using targeted metabolomics combined with proteomics, and identified a total of 1,237 differentially abundant metabolites (DAMs). Flavonoids accumulated most in winter, and the biosynthesis pathways associated with flavonoids, isoflavonoids, flavones and flavonols exhibited significant differentially expressed proteins (DEPs). Among them, PGT, FLS, CYP75B1, HIDH, IF7MAT, and UFT73C6 were positively correlated with flavonoid accumulation. Steroid saponins accumulated most in spring, and the biosynthetic pathways of steroid and brassinosteroid biosynthesis exhibited DEPs. Among them, FDFT1, TM7SF2, DHCR7, CAS1, and 3BETAHSDD were positively correlated with steroidal saponin accumulation. In summary, these results revealed the accumulation of secondary metabolites P. odoratum in different growth stages, which can provide an effective reference for the extraction of specific bioactive components and the study of their regulatory mechanisms.PMID:39759229 | PMC:PMC11696735 | DOI:10.3389/fpls.2024.1487613

Genes Dis. 2024 Nov 17;12(2):101465. doi: 10.1016/j.gendis.2024.101465. eCollection 2025 Mar.ABSTRACTHepatic ischemia-reperfusion injury is an unavoidable surgical complication of liver transplantation and the leading cause of poor graft function and increased mortality post-transplantation. Multiple mechanisms have been implicated in ischemia-reperfusion injury; however, the characteristic changes at the transcriptional and metabolic levels in the early, intermediate, and late phases of ischemia-reperfusion injury remain unclear. In the study, mice underwent laparotomy following anesthesia, and the blood vessels of the liver were clipped using a vascular clamp to form 70% warm ischemia of the liver. Mouse liver sections and serum samples were collected and divided into the Sham, I1R12, I1R24, and I1R48 groups. Transcriptomics and metabolomics analyses were performed to study characteristic alterations during the early, intermediate, and late phases of ischemia-reperfusion injury. Quantitative real-time PCR was used to validate the critical differentially expressed genes. The differentially expressed genes and metabolites were identified by transcriptomics and metabolomics analyses. Moreover, GO and KEGG enrichment analyses indicated that glucose metabolism remodeling, inflammatory response activation, and lipid metabolism remodeling were characteristic changes in the early, intermediate, and late phases of ischemia-reperfusion injury, respectively. In summary, our study revealed the importance of glucolipid metabolism in ischemia-reperfusion injury and provided potential therapeutic intervention targets and a new perspective to explore the underlying mechanisms of ischemia-reperfusion injury.PMID:39759115 | PMC:PMC11697123 | DOI:10.1016/j.gendis.2024.101465

iScience. 2024 Dec 12;27(12):111438. doi: 10.1016/j.isci.2024.111438. eCollection 2024 Dec 20.ABSTRACTWe present the results of a GC-MS and UHPLC-MS analysis of residue recovered from the marrow cavity of a 7,000-year-old bovid femur from Kruger Cave, South Africa. The femur was filled with an unknown substance into which were embedded three bone arrowheads, indicating that the femur served as a quiver. Our results reveal the presence of digitoxin and strophanthidin, both cardiac glycosides associated with hunting poisons. These two compounds, and others identified, do not occur in the same plants and thus indicate a multi-taxa recipe. This is the oldest unequivocal complex hunting poison recipe yet identified, notwithstanding the many chemically unsupported assertions of older examples. Furthermore, the identification of ricinoleic acid points to the possibility of ricin as a third toxin and lends credence to the 2012 interpretation of this compound's presence on a 24,000-year-old wooden applicator at Border Cave, South Africa.PMID:39759027 | PMC:PMC11699280 | DOI:10.1016/j.isci.2024.111438

Adv Ophthalmol Pract Res. 2024 Aug 14;5(1):1-12. doi: 10.1016/j.aopr.2024.08.003. eCollection 2025 Feb-Mar.ABSTRACTBACKGROUND: Dry eye disease (DED) stands as a prominent ocular condition of global prevalence, emerging as a growing concern within public health. However, the underlying mechanisms involved in its pathogenesis remain largely unknown. In recent years, with the development of metabolomics, numerous studies have reported alterations in ocular surface metabolism in DED and offered fresh perspectives on the development of DED.MAIN TEXT: The metabolic changes of the ocular surface of DED patients are closely intertwined with the cellular metabolism process and immune inflammation changes. This article expounds upon the correlation between ocular surface metabolism and immune inflammation alterations in DED in terms of glycolysis, lipid metabolism, amino acid metabolism, cellular signaling pathways, and immune inflammation regulation.CONCLUSIONS: The alterations in ocular surface metabolism of patients with dry eye are closely associated with their inflammatory status. Our work contributes novel insights into the pathogenesis of dry eye diseases and offers innovative molecular targets for diagnosing, detecting, and managing DED patients.PMID:39758836 | PMC:PMC11699629 | DOI:10.1016/j.aopr.2024.08.003